Browse of TCMCG006C100998 protein

CDS

Accession Number	TCMCG006C100998
gbkey	CDS
Protein Id	XP_013667043.1
Location	complement(join(9011039..9011858,9011946..9012104,9012196..9012357,9012462..9012592,9012681..9012786,9012879..9012978,9013080..9013205,9013381..9013584,9013653..9013740,9013863..9013911,9014005..9014100,9014278..9014361,9014556..9014649,9014746..9014870,9015092..9015167,9015373..9015528,9015622..9015628,9015723..9015760,9015848..9015927,9016008..9016079,9016201..9016292,9016411..9016485,9016767..9016903,9016968..9017053,9017123..9017214,9017289..9017624))
Gene	LOC106371506
GeneID	106371506
Organism	Brassica napus

Protein

Length	1196aa
Molecule type	protein
Topology	linear
Data_file_division	PLN
dblink	BioProject:PRJNA293435
db_source	XM_013811589.2
Definition	DNA ligase 4 isoform X1 [Brassica napus]

EGGNOG-MAPPER Annotation

COG_category	L
Description	DNA ligase
KEGG_TC	-
KEGG_Module	-
KEGG_Reaction	R00381        [VIEW IN KEGG]
KEGG_rclass	RC00005        [VIEW IN KEGG]
BRITE	ko00000        [VIEW IN KEGG] ko00001        [VIEW IN KEGG] ko01000        [VIEW IN KEGG] ko03400        [VIEW IN KEGG]
KEGG_ko	ko:K10777        [VIEW IN KEGG]
EC	6.5.1.1        [VIEW IN KEGG]        [VIEW IN INGREDIENT]
KEGG_Pathway	ko03450        [VIEW IN KEGG] map03450        [VIEW IN KEGG]
GOs	GO:0000726        [VIEW IN EMBL-EBI] GO:0003674        [VIEW IN EMBL-EBI] GO:0003824        [VIEW IN EMBL-EBI] GO:0003909        [VIEW IN EMBL-EBI] GO:0003910        [VIEW IN EMBL-EBI] GO:0005575        [VIEW IN EMBL-EBI] GO:0005576        [VIEW IN EMBL-EBI] GO:0005622        [VIEW IN EMBL-EBI] GO:0005623        [VIEW IN EMBL-EBI] GO:0005634        [VIEW IN EMBL-EBI] GO:0005737        [VIEW IN EMBL-EBI] GO:0005911        [VIEW IN EMBL-EBI] GO:0006139        [VIEW IN EMBL-EBI] GO:0006259        [VIEW IN EMBL-EBI] GO:0006266        [VIEW IN EMBL-EBI] GO:0006281        [VIEW IN EMBL-EBI] GO:0006289        [VIEW IN EMBL-EBI] GO:0006297        [VIEW IN EMBL-EBI] GO:0006302        [VIEW IN EMBL-EBI] GO:0006303        [VIEW IN EMBL-EBI] GO:0006725        [VIEW IN EMBL-EBI] GO:0006807        [VIEW IN EMBL-EBI] GO:0006950        [VIEW IN EMBL-EBI] GO:0006974        [VIEW IN EMBL-EBI] GO:0008150        [VIEW IN EMBL-EBI] GO:0008152        [VIEW IN EMBL-EBI] GO:0009314        [VIEW IN EMBL-EBI] GO:0009506        [VIEW IN EMBL-EBI] GO:0009628        [VIEW IN EMBL-EBI] GO:0009987        [VIEW IN EMBL-EBI] GO:0010165        [VIEW IN EMBL-EBI] GO:0010212        [VIEW IN EMBL-EBI] GO:0016874        [VIEW IN EMBL-EBI] GO:0016886        [VIEW IN EMBL-EBI] GO:0030054        [VIEW IN EMBL-EBI] GO:0032807        [VIEW IN EMBL-EBI] GO:0032991        [VIEW IN EMBL-EBI] GO:0033554        [VIEW IN EMBL-EBI] GO:0034641        [VIEW IN EMBL-EBI] GO:0043170        [VIEW IN EMBL-EBI] GO:0043226        [VIEW IN EMBL-EBI] GO:0043227        [VIEW IN EMBL-EBI] GO:0043229        [VIEW IN EMBL-EBI] GO:0043231        [VIEW IN EMBL-EBI] GO:0044237        [VIEW IN EMBL-EBI] GO:0044238        [VIEW IN EMBL-EBI] GO:0044260        [VIEW IN EMBL-EBI] GO:0044422        [VIEW IN EMBL-EBI] GO:0044424        [VIEW IN EMBL-EBI] GO:0044428        [VIEW IN EMBL-EBI] GO:0044446        [VIEW IN EMBL-EBI] GO:0044464        [VIEW IN EMBL-EBI] GO:0046483        [VIEW IN EMBL-EBI] GO:0048046        [VIEW IN EMBL-EBI] GO:0050896        [VIEW IN EMBL-EBI] GO:0051103        [VIEW IN EMBL-EBI] GO:0051716        [VIEW IN EMBL-EBI] GO:0055044        [VIEW IN EMBL-EBI] GO:0071704        [VIEW IN EMBL-EBI] GO:0090304        [VIEW IN EMBL-EBI] GO:0140097        [VIEW IN EMBL-EBI] GO:1901360        [VIEW IN EMBL-EBI]

Sequence

CDS:   ATGACGGAGGAGATCAAACTCAGCGTACTAGTGTCTCTCTTCAACTGGATTCAGAAGAGCAAAACCTCATCCCAGAAACGCTCCAAGTTCCGCAAGTTCCTCGACACCTACTGCAAACCCTCCGATTACTTCTCCGCCGTGCGTCTCATCATCCCGTCGCTCGACCGAGAGCGAGGCAGCTACGGCCTCAAGGAGTCTGTGCTCGCCACGTGTCTCATCGACGCCCTCGGAATCTCTCGCGATGCTCCCGACGCGGTTCGCCTTCTCAATTGGCGCAAAGGAGGAACCGCTAAGGCTGGAGCCAACGCCGGAAACTTCTCCTTAATTGCTGCTGAGGTGCTGCAACGTAGGCAAGGGATGGCGTCTGGTGGGTTGAGTGTTAAGGAGTTGAATGATTTGCTTGATCGTTTGGCTTCGAGTGAGAACAGAGGGGAGAAGACTTGTGTTCTTTCTACGCTGATTCAGAAGACGAATGCACAGGAGATGAAGTGGGTCATTAGGATCATTCTTAAAGATTTGAAGCTGGGGATGAGCGAGAGGAGTATTTTTCAGGAGTTCCATCCAGATGCTGAGGACTTGTTTAATGTCACATGTGACTTGAAACTAGTCTGTGAAAAGCTCAGGGATCGCCACCAACGTCACAAGCGCCAGGATATAGAAGTTGGAAAAGCTGTACGACCCCAGTTAGCTATGCGTATCAGTGACGTAAATGCTGCTTGGAAGAAGCTCCATGGGAAAGATGTAGTTGCTGAGTGCAAATTTGATGGGGATCGCATACAGATACACAAAAATGGGTCTGAGATACATTACTTCTCTAGGAACTTCCTTGACCATTCTGAATATGCACATGCCATGTCGGATCTTATCGTACAAAATATAATGGCTGACAAGTGTATCCTTGATGGTGAAATGTTGGTTTGGGATACATCACTTAATCGGTTTGCTGAGTTTGGTTCTAATCAGGAAATAGCCAAAGCAGCAAGGGAGGGTCTCGACAGCCATAGACAGTTATGTTATGTTGCCTTTGATGTGCTTTATGTTGGCGATACTAGCGTCATCCACCAGAGTTTAAAAGAACGGCATGAACTCCTGAGGAAAGTGGTTAAGCCTTTAAAAGGCCGGCTTGAAGTTCTAGTGCCCGAAGGTGGTCTCAATGTTCATCGCCCTTCTGGGGAACCAAGTTGGTCTATTGTGGTTCATTCTGCAGCTGATGTTGAGCGGTTTTTCAAAGAAACAGTTGAAAATAGGGATGAAGGAGTTGTGCTTAAAGATCTGGGATCGAAATGGGAACCTGGAGATCGTAGTGGCAAGTGGTTGAAGTTGAAGCCTGAATATGTCCGGGCTGGTTCTGATCTAGATGTTCTTATAATAGGAGGATACTATGGCTCTGGCCGTCACGGAGGAGAGGTAGCACAGTTTCTCGTTGGGTTGGCTGACCGGGCAGAGACAAATGTGTATCCCAGGCGATTTATGTCGTTTTGTAGAGTTGGCACAGGACTATCTGATGAAGAGCTTAACACTGTTGTAAGCAAACTGAAGCCTTATTTCAGAAAAAACGAACAGCCAAAGAAGGCTCCACCAAGCTTTTATCAGGTCACAAATCACTCAAAAGAGAGACCTGATGTTTGGATCGAAAGCCCGGAAAAATCAATAATACTCTCCATCACTAGTGACATCAGGACAATAAGGTCTGAGGTTTTTGTGGCACCTTACAGCCTGAGGTTTCCTCGTATTGATAAAGTAAGATACGACAAACCTTGGCACGAGTGTCTGGATGTGCAATCTTTTGTGGAATTGGTGAACTCGAGTAACGGCACCACACAGAAACAAAAGGAATCCGAAAGCACTCAGGACAATCCAAAAGTCATTAAAACCTCCAAGAGAGGAGGAGAGAAAAAGAATGTGTCTCTTGTCCCATCTCAGTTTATTCAGACTGATGTATCGGATATCAAGGGCAAGACCTCAATCTTCTCCAATATGATATTTTATTTTGTAAACCTGCCTCGGTCCCATTCTCTTGATACATTCCACAAAATGGTGGTTGAGAATGGAGGGAAGTTCTCAATGAACTTAAACAATTCTGTGACTCATTGCATTGCAGCGGAAAGCAGTGGAATAAAGTATCAGGCAGCAAAACGTCAAAGAGATGTCATCCACTTTTCATGGGTCTTAGATTGTTGTTCACGGAATAATCTTCTTCCGTTGCAGCCAAAGTACTTCCTCCATCTCACTGATGCTTCAAGGACCAAATTACAGGATGAAATTGACGAGTTTTCCGATTCTTATTTCTTTGATTTAGACCTTGAAGGTCTCAAACAGGTCTTGAGCAATGCTAAGCAATCGGAAGACTCAAAATCCATTGAATGCTACAAGAAAAAGCTATGTCCGGAGAAAAGATGGTCCTGCTTCATCGGTTGCTGCATTTACTTTCACCTCTATAGTGAAACACTGAGTATTGAAGAGGAAGCTCTGTTGGGAATCATGGCTAAGAGATTAGCGCTTGAAGTCTTAATGGGAGGTGGTAAAGTCAGCAATAATCTTGCTCATGCGTCTCACCTTGTAGTCCTTGCTTTAACAGAAGACTCTTTGGATTTTACTTCAGTTTCAAAAAGTTTCAGCGAAAAGGAGAAACGTCTTTTGATGAAGAGAAGGCTACATGTTGTTAACTCGAACTGGTTAGAGGACAGTTTGCAAAGAGAGCAAAAACTAAGCGAGGAGGTGTACACTCTGAGGCCTAAGAGTATGGAAGAGTCTGATACTGAAGAATCAGATAAATCTGAACATGATACAACGGAAGTAGCTTCTGGTGGTAGGGCTCAAACTGAAGAGCCAGCTTCCTCTAAATTGGCAACTACGAGTTCAAGAGGACGGTCAAGTACTCGAGCTGGTAATAAAAGGGGAAGGTCTTCTACAAACTCAGTGAAACGAGTACAGAGACGCAGAGGCAAGCAGCCTTCTAAGATAGGTGGAAGTGAAACAGAGGAGAGTGATGCGGCTTCGGAAGAAAAGGCTGCAACAAGACTCAGTGATGATATAGCAGAAGACTCTGATGATGCTCAAAGAAACTCCAGGAGAGGAAGATCTGCAAAGAGAGGGAAGTCTCGTGTGGCACAACCCCAAAGAGTACAGAGACCAAGAAGAGGCAAGAAGCCTTTGAAGATAGGAGGAGATGACTCTGAGGAAAACGATGATTTTGATGACAAGAAAAATGATTCCGCGGACGAGGCAAAGCACAGAGAATCACTGGAGAGAGATAACACAGTATCAGTTGAAGAGGCCTCCTCGCAAGATTCTAGAAATGCAAAGACCGAGATGGATAGGGAAGAGAAGATACAAATCCATGAGGATCCATTACAAGCTATGTTGATGAACATGATCCCAAGCCTCACTCTGAGAAACACAAGCCGAACGGGCGAAGCTAGTACGGCTAATGTTTGTGGTGAGAGTGAGTCTTCAGAGAAAAGAAAACTTGGCGCCGAGACTGATAATGCTTGTGTGAAGAACGCAGAGGCAGATGAAGTTCCTCCTCCTGTGAAGAAAAAGAAAGTTAGCTACCGCGATGTTGCCGGAGAACTGCTCAAGGACTGGTGA

Protein:   MTEEIKLSVLVSLFNWIQKSKTSSQKRSKFRKFLDTYCKPSDYFSAVRLIIPSLDRERGSYGLKESVLATCLIDALGISRDAPDAVRLLNWRKGGTAKAGANAGNFSLIAAEVLQRRQGMASGGLSVKELNDLLDRLASSENRGEKTCVLSTLIQKTNAQEMKWVIRIILKDLKLGMSERSIFQEFHPDAEDLFNVTCDLKLVCEKLRDRHQRHKRQDIEVGKAVRPQLAMRISDVNAAWKKLHGKDVVAECKFDGDRIQIHKNGSEIHYFSRNFLDHSEYAHAMSDLIVQNIMADKCILDGEMLVWDTSLNRFAEFGSNQEIAKAAREGLDSHRQLCYVAFDVLYVGDTSVIHQSLKERHELLRKVVKPLKGRLEVLVPEGGLNVHRPSGEPSWSIVVHSAADVERFFKETVENRDEGVVLKDLGSKWEPGDRSGKWLKLKPEYVRAGSDLDVLIIGGYYGSGRHGGEVAQFLVGLADRAETNVYPRRFMSFCRVGTGLSDEELNTVVSKLKPYFRKNEQPKKAPPSFYQVTNHSKERPDVWIESPEKSIILSITSDIRTIRSEVFVAPYSLRFPRIDKVRYDKPWHECLDVQSFVELVNSSNGTTQKQKESESTQDNPKVIKTSKRGGEKKNVSLVPSQFIQTDVSDIKGKTSIFSNMIFYFVNLPRSHSLDTFHKMVVENGGKFSMNLNNSVTHCIAAESSGIKYQAAKRQRDVIHFSWVLDCCSRNNLLPLQPKYFLHLTDASRTKLQDEIDEFSDSYFFDLDLEGLKQVLSNAKQSEDSKSIECYKKKLCPEKRWSCFIGCCIYFHLYSETLSIEEEALLGIMAKRLALEVLMGGGKVSNNLAHASHLVVLALTEDSLDFTSVSKSFSEKEKRLLMKRRLHVVNSNWLEDSLQREQKLSEEVYTLRPKSMEESDTEESDKSEHDTTEVASGGRAQTEEPASSKLATTSSRGRSSTRAGNKRGRSSTNSVKRVQRRRGKQPSKIGGSETEESDAASEEKAATRLSDDIAEDSDDAQRNSRRGRSAKRGKSRVAQPQRVQRPRRGKKPLKIGGDDSEENDDFDDKKNDSADEAKHRESLERDNTVSVEEASSQDSRNAKTEMDREEKIQIHEDPLQAMLMNMIPSLTLRNTSRTGEASTANVCGESESSEKRKLGAETDNACVKNAEADEVPPPVKKKKVSYRDVAGELLKDW